986dd7c253b2d931bc0ddcbcedbda3cb *DESCRIPTION
22c8160bf54260aa32693727f7a91a69 *NAMESPACE
72ba8318b1c5492c390d1e7133c56ecf *NEWS.md
5d7d5aaeacdcbb2b7c94e2a7a12c8283 *R/MRCA-methods.R
06ec399498638dc653a3a0ce8ef3ae5c *R/RcppExports.R
ee8ad14745e24da2f0ab9ce624116e73 *R/addData-methods.R
7c7821d59f2f2fc11a09163747a50d94 *R/ancestors.R
f60e16beb8a5551c2c08e486d963c2a7 *R/checkdata.R
cf200a46cf69d04f04f6b31c80c75bb1 *R/edgeLength-methods.R
9edcd964c68d44867b019abe4105f093 *R/extractTree.R
ad9a4f02a254be9bb954601faa4f58c8 *R/formatData.R
c91b1a7bbcea7047e0370985bbcf4d44 *R/getNode-methods.R
182ac8ec6285e37b88a9da9c7e1106fa *R/internal-constructors.R
7bd80915399baa2675528dfed8b193e1 *R/labels-methods.R
cb2282bb40632e8f7039991482938d11 *R/multiphylo4-class.R
97bef8bb049e23553a30e9c00f07d6f5 *R/nodeId-methods.R
c0e2782404632e4e3420ac9520a7eb67 *R/oldclasses-class.R
016336404f44444178d488798ae5607c *R/pdata.R
871f687a6a4c9e2b3ca3c7ce787dcc4a *R/phylo4-accessors.R
4bebc32d3934dce824c054b0ce549be3 *R/phylo4-class.R
be1814a94cc3b26b66451f236b67cedc *R/phylo4-methods.R
3a740fa03aa3940f253b321e006fa157 *R/phylo4d-accessors.R
d28d5cb63f628bc8cf032d226857ceb1 *R/phylo4d-class.R
2c8a0217d8812d1e3702aa5cee53ae82 *R/phylo4d-methods.R
68a69fcd456d7872a093e31d87f02f62 *R/phylobase-package.R
6cfe1b8f4fa6b546480b9b0917e8884b *R/phylobase.options.R
0c1561e5ae25e50f5811a863450a878e *R/phylomats-class.R
3814790468f7b47f335c4ba0316150ed *R/print-methods.R
3c625fbec9acfd9826bf6a58c49f3da1 *R/readNCL.R
c01c34a9709736825a787cd382300038 *R/reorder-methods.R
af36b2ab79cdce9ab7f1c51b99a9120c *R/root-methods.R
874083ceb7ff2a63d4e31e2dfa9b3f6f *R/setAs-methods.R
b12e60d130b8617e92ece7cd5e2faa08 *R/shortestPath-methods.R
cf9d240b5b1eeb9312006175b241d61c *R/subset-methods.R
ddb1f86ef610780a336bdf7473b1cb69 *R/summary-methods.R
957d6bb59eea50e691c3411bd7c8a455 *R/tbind.R
54333801e92f6320240187986cf19887 *R/tdata-methods.R
5baf1c1d1a6a5a7794363dde93257d4b *R/treePlot.R
a3451a2d297b035ecf6561a4fdb3ae28 *R/treestruc.R
38747d50f18ac2b910afecf24ed1d92c *R/zzz.R
5bcb943296433b87b9b9a9db53707090 *build/vignette.rds
7a03af7f836f7bff48f5b9dc83b28ca8 *data/geospiza.rda
8a843dd8cd966030b246f06adee0ac13 *data/geospiza_raw.rda
26e3cdf5f9480147fd9ef4a3f8b75c3b *data/owls4.rda
a7c04f77c4e9ddd2a430207cbaea7281 *inst/doc/phylobase.Rnw
d3572e0ea0a35b93931faf4bbec22a18 *inst/doc/phylobase.pdf
7cfba1e69724dd93fe4a07525e419ed4 *inst/nexmlfiles/comp_analysis.xml
1fff9fa62be103e818e88abf156ffacb *inst/nexusfiles/ExContData.Rdata
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a9a55d0e542ea83751c134892a17440f *inst/nexusfiles/NastyLabels.nex
72b184a406aa23c2e1711df4f3fd0275 *inst/nexusfiles/NastyLabels2.nex
f8225a526530eabfaa8ea117e2a82aae *inst/nexusfiles/co1.nex
f0289cdad66a374a438f582e2ab76a29 *inst/nexusfiles/minNex.nex
f77c8d44a525dbb3b06c335110ad3547 *inst/nexusfiles/minSeq.nex
4d5d4d71cf83b54eed9811470482e8d2 *inst/nexusfiles/newick.tre
51849f725c9b6097be5f2b6453c33844 *inst/nexusfiles/noStateLabels.nex
9fec41c9d01e57b43dc8e55f1547096b *inst/nexusfiles/shorebird_underscore.nex
d7eeca6e30d22f9a431822452109e922 *inst/nexusfiles/testSubsetTaxa.nex
ee3bac96ca12af01b3c7610df8339f34 *inst/nexusfiles/test_min.nex
8c16a312ee724e2a94aecd5b2c6df0ee *inst/nexusfiles/treeRoundingError.nex
99b2fe340a17a7e8cac9cfb9bdbafe70 *inst/nexusfiles/treeWithContinuousData.nex
9d27abaf6517ea4ca9881bd9f8c0032a *inst/nexusfiles/treeWithDiscAndContData.nex
963e6a5568b7fae9291232b8abfd496c *inst/nexusfiles/treeWithDiscreteData.nex
6deabaca8bbfe8c34e60d06349f31398 *inst/nexusfiles/treeWithPolyExcludedData.nex
b6390d9653d37f920612cbe3a8d38fe5 *inst/nexusfiles/treeWithSpecialCharacters.nex
4961bb5af89e1cfd63944af5d8ee8408 *inst/nexusfiles/treeWithUnderscoreLabels.nex
14e3e9a37e0049b3937bd162c5dca491 *man/MRCA.Rd
dd27ccc5906ca0f904cbf2b496b70073 *man/addData-methods.Rd
e5249ce076d273abf78900cddaa18d92 *man/ancestors.Rd
a6b14c17f93e06c4e65e8747aea5ea17 *man/checkPhylo4.Rd
19f4641c8b09b5ab28e2849a29ff52c9 *man/edgeLength-methods.Rd
9a13f89b1fb572bf7c63547b40eb8420 *man/edges-accessors.Rd
2760643ffad246f2d48469d89995a014 *man/extractTree.Rd
6ca46a853f000bd5f5c123d6e6d6528a *man/formatData.Rd
baf3e3ac022643e2f82f6b3a6cfe7a67 *man/geospiza.Rd
f1c43b204efad732e10a396196c13728 *man/getNode-methods.Rd
9b56511c8db26ac7407573cd7775cbc9 *man/labels-methods.Rd
e183fa408a5f4a0f57c0bf2971aac20c *man/multiPhylo-class.Rd
1eb9cabdfdbc8d2fd16f6526c54a7b6a *man/nTips-methods.Rd
61c192152090fbc25be0c50bd21494eb *man/nodeId-methods.Rd
428cd8b0a9c7c0cdf35212714a8a045a *man/owls4.Rd
f8af9bb9b7e3b87b5a0008612a1cba40 *man/pdata-class.Rd
333cf7177421a8636d46869150146f77 *man/pdata.Rd
1c554e78bb05773f209d5e8f1af6fbf5 *man/phylo4-class.Rd
18f68cfa04725945b554d1f3369a9904 *man/phylo4-methods.Rd
151594626136966aefd452fdceee7ae6 *man/phylo4d-accessors.Rd
839038289fa48947edb303614a219e89 *man/phylo4d-class.Rd
3ab331250d9a1368d1f6f4a040db8faf *man/phylo4d-methods.Rd
cdffcb45a198f10867593bf1b0f59d90 *man/phyloXXYY.Rd
99f9c935ceb4e78df96a9d2d2f9de3da *man/phylobase-package.Rd
1128140fbea106a83d4b80f28297745d *man/phylobase.options.Rd
d6c81941094a52e27cc0f68af6bdb3f4 *man/phylobubbles.Rd
9bd52e22d03a5533ac9c1ffd614a28a0 *man/phylomat-class.Rd
57639b65f483c1c5bbaa1eb43fa866a6 *man/plotOneTree.Rd
497381af0d2cce17272e0dbc42b66191 *man/print-methods.Rd
54f591152692be330febfdc911d984a9 *man/readNexus.Rd
0ca5fe28fb276447827308a2af394b99 *man/reorder-methods.Rd
5cd1c5a73db8c9d7da35cfbd5bc9ff09 *man/root-methods.Rd
0f78e5bc3f12bd543b45b2a0fc06caff *man/setAs-methods.Rd
887f51438536dbd16b3a354a6e8fd241 *man/shortestPath-methods.Rd
34f7eac3993b5a7ed3004488235ac459 *man/subset-methods.Rd
59ba1088c28c9358f2f1e5c65f6c0941 *man/summary-methods.Rd
55c9e6ccc81e2315d7c992d643ef7b7e *man/tdata-methods.Rd
f4f7c9ec114f3f2d6b8f6be907a47637 *man/tip.data.plot.Rd
78b73563615a4a873a1219848716cd1d *man/treePlot-methods.Rd
57f3c42826728f8dbcfd5f222406058f *man/treeStructure-methods.Rd
ed0d19722e28a7d316256f2c247be33e *src/Makevars
1e0cc7f2ea27756865f63d6758ca90a8 *src/Makevars.win
e1ca24a85a7bfd1c19cede5892031e25 *src/RcppExports.cpp
15cbb15a89b490dedacabf4c4d3f29c9 *src/ancestors.c
c78cc56ae6c035ed9a0a584424eac960 *src/checkPhylo4.cpp
b06c8e98609078f1734f5c5b0614ca43 *src/descendants.c
1b1d0ecd28d6eb26a29fc576091cc5c3 *src/phyloXX.c
dc5efccf4d370c4c7b0801bcbfd74a9b *src/reorderBinary.c
1944dc3ac77930043bb7ccb02f3718cd *src/reorderRobust.c
cb2ef3c2e0613221c053e3236b36debd *tests/misctests.R
9f8cda1294f43f665a0a96aa7b7f7977 *tests/phylo4dtests.R
fd985e3b18ff2d41e3c213f8b9418f27 *tests/phylosubtest.R
db2a0aaf0280429619fb99b2855c835e *tests/phylotorture.R
647bb8fbf0e8266427210598fc3fd21a *tests/plottest.R
c08c45b2d046fc6386a34c9fe78aea51 *tests/roundtrip.R
0a268e814b425b9356091afae16a22dc *tests/test-all.R
38c287fa7b4426eab00c31412ff770be *tests/testprune.R
c0345feb32ec3fb041e48f6a35c2d653 *tests/testthat/test.badnex.R
bf3987b5a02228ef385fcb1550254ffa *tests/testthat/test.checkdata.R
dabcabf70354afc578c5633231a4fb71 *tests/testthat/test.class-phylo4.R
871e4ed23cfc659f3df4a0648eaca39c *tests/testthat/test.class-phylo4d.R
7bfa9a811172037df31773779b89cdef *tests/testthat/test.formatData.R
1275c5c4b612317ed4e6c9f1a7e8eb15 *tests/testthat/test.methods-oldclasses.R
fb3c95bcfb9297e8a1ec897e3db1ffce *tests/testthat/test.methods-phylo4.R
9dd09d9e64303c752ed57a7331543854 *tests/testthat/test.pdata.R
e4d54b4db45a69a5e40811975cc44274 *tests/testthat/test.phylo4.R
d38fa9feddccd722b1c56a4864dbfc9e *tests/testthat/test.phylobase.options.R
e1d0fada9b7ed61564f9fb1570d02f4f *tests/testthat/test.prune.R
d04b3ce36e78bf0b03ea97355b6bb3cc *tests/testthat/test.readNCL.R
ea0cce4681edbf1067b681bd89327c50 *tests/testthat/test.setAs-Methods.R
37b1df7381866235003e027eff81e2c7 *tests/testthat/test.subset.R
7ce9e14f01d0b524e56ec238d90275e0 *tests/testthat/test.tbind.R
3286fe80846d087c46a36fcf380e42a7 *tests/testthat/test.treePlot.R
7020fbe04de6da74f575a83039235325 *tests/testthat/test.treestruc.R
521ece6dcb763bcbfd39c327fff884e2 *tests/testthat/test.treewalk.R
f3f850c2fd5df4c58e5802d2e8ad01b5 *vignettes/auto/developer.el
be9341670d0583a8d5e6292441df0659 *vignettes/auto/phylobase.el
a7c04f77c4e9ddd2a430207cbaea7281 *vignettes/phylobase.Rnw
